CellPick/pyproject.toml at main · BorgwardtLab/CellPick · GitHub

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[tool.poetry]
name = "cellpick"
version = "0.2.3"
description = "An interactive cell selection tool for spatial omics"
authors = ["Lucas Miranda, Paolo Pellizzoni"]
license = "BSD3"
readme = "README.md"
packages = [
    { include = "cellpick" }
]
include = ["cellpick/assets/*"]

[tool.poetry.scripts]
cellpick = "cellpick.__main__:main"

[tool.poetry.dependencies]
python = ">=3.10,<3.14"
scikit-image = ">=0.24.0"
tifffile = "2024.8.30"
untangle = "^1.2.1"
pandas = "^2.3.0"
lxml = "^5.4.0"
tqdm = "^4.67.1"
pyside6 = "^6.9.1"
qt-material = "^2.17"
shapely = ">=2.0.7"
czifile = "^2019.7.2.1"
pyobjc = {version = "^11.1", markers = "sys_platform == 'darwin'"}
imagecodecs = "2024.12.30"
numpy = ">=2.0.2"
spatialdata = {version = "^0.2.3", optional = true}
spatialdata-io = {version = "^0.1.5", optional = true}
spatialdata-plot = {version = "^0.2.5", optional = true}
xarray = {version = ">=2024.11.0,<2026.0.0", optional = true}
zarr = {version = ">=2.18.3,<3.0.0", optional = true}
dask = {version = ">=2024.11.2,<2025.1.0", extras = ["dataframe"], optional = true}
geopandas = {version = "^1.0.1", optional = true}

[tool.poetry.extras]
spatialdata = ["spatialdata", "spatialdata-io", "spatialdata-plot", "xarray", "zarr", "dask", "geopandas"]

[tool.poetry.group.dev.dependencies]
black = "^25.1.0"
isort = "^6.0.1"
sphinx = ">=7.4.7"
autodoc = "^0.5.0"
sphinx-argparse = ">=0.4.0"
sphinx-design = "^0.6.1"
sphinx-copybutton = "^0.5.2"
sphinx-gallery = "^0.19.0"
accessible-pygments = "^0.0.5"
sphinx-book-theme = "^1.1.4"
twine = "^6.1.0"
bumpver = "^2025.1131"

[tool.bumpver]
current_version = "0.2.0"
version_pattern = "MAJOR.MINOR.PATCH"
commit_message = "Bump version: {old_version} → {new_version}"
tag_message = "v{new_version}"
tag_name = "v{new_version}"

[tool.bumpver.file_patterns]
"pyproject.toml" = [
    '^version = "{version}"'
]
"docs/source/conf.py" = [
    '^release = "{version}"'
]

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"