Replace pipenv check with pip-audit

Why these changes are being introduced:

As of pipenv 2025.0.1 the use of `pipenv check` would throw
an error, indicating that the library `safety` was not installed.
It worked to run `pipenv check --auto-install` which would
temporarily install `safety`, but this was not ideal for multiple
reasons.

First, we anticipate potentially moving away from `pipenv`.

Second, it appears that `safety` is moving to a pay / subscription
model.

Third, it remains a little obfuscated what `pipenv check` is actually
doing.

As this new situation affects all builds in Github Actions CI,
we need a way to scan for vulnerabilities that ideally is not
a massive overhaul of our vulnerability scanning approach.

How this addresses that need:

`pip-audit` is a nice standalone, open-source library that
performs very similar work to `safety`.

This commit replaces `pipenv check` (which was `safety` under
the hood) with `pip-audit`.

Side effects of this change:
* Builds will be successful in Github Actions

Relevant ticket(s):
* https://mitlibraries.atlassian.net/browse/IN-1240

Author: ghukill

.gitignore

@@ -159,3 +159,5 @@ cython_debug/
 
 # VSCode
 .vscode
+
+output/

.pre-commit-config.yaml

@@ -22,8 +22,8 @@ repos:
         language: system
         pass_filenames: true
         types: ["python"]
-      - id: safety
-        name: safety
-        entry: pipenv check
+      - id: pip-audit
+        name: pip-audit
+        entry: pipenv run pip-audit
         language: system
         pass_filenames: false

Makefile

@@ -44,7 +44,7 @@ ruff: # Run 'ruff' linter and print a preview of errors
 	pipenv run ruff check .
 
 safety: # Check for security vulnerabilities and verify Pipfile.lock is up-to-date
-	pipenv check
+	pipenv run pip-audit
 	pipenv verify
 
 lint-apply: black-apply ruff-apply # Apply changes with 'black' and resolve 'fixable errors' with 'ruff'

Pipfile

@@ -24,5 +24,7 @@ pyarrow-stubs = "*"
 pytest = "*"
 ruff = "*"
 setuptools = "*"
+pip-audit = "*"
+
 [requires]
 python_version = "3.12"