|
| 1 | +Changelog |
| 2 | +========= |
| 3 | + |
| 4 | + |
| 5 | +(unreleased) |
| 6 | +------------ |
| 7 | +- Updates. [jkobject] |
| 8 | + |
| 9 | + |
| 10 | +1.3.1 (2025-12-01) |
| 11 | +------------------ |
| 12 | +- Release: version 1.3.1 🚀 [jkobject] |
| 13 | +- Much better plots. [jkobject] |
| 14 | +- Better plots. [jkobject] |
| 15 | +- Debugs for uv install. [jkobject] |
| 16 | +- Nothing really. [jkobject-tower] |
| 17 | +- Debug. [jkobject] |
| 18 | +- Merge branch 'main' of https://github.com/cantinilab/GRnnData. |
| 19 | + [jkobject] |
| 20 | +- Update LICENSE. [Jérémie Kalfon] |
| 21 | +- Small improvements. [jkobject] |
| 22 | +- Adding versions. [jkobject] |
| 23 | +- Update README.md. [Jérémie Kalfon] |
| 24 | +- Cleanups. [maestro-jk] |
| 25 | +- Debug in some cases. [maestro-jk] |
| 26 | +- Merge pull request #6 from |
| 27 | + cantinilab/dependabot/github_actions/astral-sh/setup-uv-4. [Jérémie |
| 28 | + Kalfon] |
| 29 | + |
| 30 | + Bump astral-sh/setup-uv from 3 to 4 |
| 31 | +- Bump astral-sh/setup-uv from 3 to 4. [dependabot[bot]] |
| 32 | + |
| 33 | + Bumps [astral-sh/setup-uv](https://github.com/astral-sh/setup-uv) from 3 to 4. |
| 34 | + - [Release notes](https://github.com/astral-sh/setup-uv/releases) |
| 35 | + - [Commits](https://github.com/astral-sh/setup-uv/compare/v3...v4) |
| 36 | + |
| 37 | + --- |
| 38 | + updated-dependencies: |
| 39 | + - dependency-name: astral-sh/setup-uv |
| 40 | + dependency-type: direct:production |
| 41 | + update-type: version-update:semver-major |
| 42 | + ... |
| 43 | +- Adding version. [maestro-jk] |
| 44 | + |
| 45 | + |
| 46 | +1.1.5 (2024-11-27) |
| 47 | +------------------ |
| 48 | +- Release: version 1.1.5 🚀 [maestro-jk] |
| 49 | +- Merge pull request #5 from |
| 50 | + cantinilab/dependabot/github_actions/codecov/codecov-action-5. |
| 51 | + [Jérémie Kalfon] |
| 52 | + |
| 53 | + Bump codecov/codecov-action from 4 to 5 |
| 54 | +- Bump codecov/codecov-action from 4 to 5. [dependabot[bot]] |
| 55 | + |
| 56 | + Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4 to 5. |
| 57 | + - [Release notes](https://github.com/codecov/codecov-action/releases) |
| 58 | + - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) |
| 59 | + - [Commits](https://github.com/codecov/codecov-action/compare/v4...v5) |
| 60 | + |
| 61 | + --- |
| 62 | + updated-dependencies: |
| 63 | + - dependency-name: codecov/codecov-action |
| 64 | + dependency-type: direct:production |
| 65 | + update-type: version-update:semver-major |
| 66 | + ... |
| 67 | +- Merge branch 'main' of https://github.com/cantinilab/GRnnData into |
| 68 | + main. [jkobject] |
| 69 | +- Update README.md. [Jérémie Kalfon] |
| 70 | +- Add files via upload. [Jérémie Kalfon] |
| 71 | +- Nothing. [jkobject] |
| 72 | +- Merge branch 'main' of https://github.com/cantinilab/GRnnData. |
| 73 | + [maestro-jk] |
| 74 | +- Making it fail and few debugs. [jkobject] |
| 75 | +- Update README.md. [Jérémie Kalfon] |
| 76 | +- Merge pull request #4 from |
| 77 | + cantinilab/dependabot/github_actions/softprops/action-gh-release-2. |
| 78 | + [Jérémie Kalfon] |
| 79 | + |
| 80 | + Bump softprops/action-gh-release from 1 to 2 |
| 81 | +- Bump softprops/action-gh-release from 1 to 2. [dependabot[bot]] |
| 82 | + |
| 83 | + Bumps [softprops/action-gh-release](https://github.com/softprops/action-gh-release) from 1 to 2. |
| 84 | + - [Release notes](https://github.com/softprops/action-gh-release/releases) |
| 85 | + - [Changelog](https://github.com/softprops/action-gh-release/blob/master/CHANGELOG.md) |
| 86 | + - [Commits](https://github.com/softprops/action-gh-release/compare/v1...v2) |
| 87 | + |
| 88 | + --- |
| 89 | + updated-dependencies: |
| 90 | + - dependency-name: softprops/action-gh-release |
| 91 | + dependency-type: direct:production |
| 92 | + update-type: version-update:semver-major |
| 93 | + ... |
| 94 | +- Adding setuptools. [jkobject] |
| 95 | +- Added coverage and better install. [jkobject] |
| 96 | +- New grnndata. [maestro-jk] |
| 97 | + |
| 98 | + |
| 99 | +1.1.4 (2024-10-08) |
| 100 | +------------------ |
| 101 | +- Release: version 1.1.4 🚀 [jkobject] |
| 102 | +- Update. [jkobject] |
| 103 | + |
| 104 | + |
| 105 | +1.1.3 (2024-10-08) |
| 106 | +------------------ |
| 107 | +- Release: version 1.1.3 🚀 [jkobject] |
| 108 | +- Added ruff and uv. [jkobject] |
| 109 | +- Better tests. [jkobject] |
| 110 | + |
| 111 | + |
| 112 | +1.1.2 (2024-09-04) |
| 113 | +------------------ |
| 114 | +- Release: version 1.1.2 🚀 [jkobject] |
| 115 | +- More tests. [jkobject] |
| 116 | + |
| 117 | + |
| 118 | +1.1.1 (2024-09-04) |
| 119 | +------------------ |
| 120 | +- Release: version 1.1.1 🚀 [jkobject] |
| 121 | +- Makefile update. [jkobject] |
| 122 | + |
| 123 | + |
| 124 | +1.1.0 (2024-09-04) |
| 125 | +------------------ |
| 126 | +- Release: version 1.1.0 🚀 [jkobject] |
| 127 | +- Better release process. [jkobject] |
| 128 | +- Format and clean. [jkobject] |
| 129 | +- Wip. [jkobject] |
| 130 | +- Pushing the tests. [jkobject] |
| 131 | +- Adding codecov. [jkobject] |
| 132 | +- Updating the makefile. [jkobject] |
| 133 | +- Update package version. [jkobject] |
| 134 | + |
| 135 | + |
| 136 | +1.0.2 (2024-08-11) |
| 137 | +------------------ |
| 138 | +- Release: version 1.0.2 🚀 [jkobject] |
| 139 | +- Release: version 1.0.1 🚀 [jkobject] |
| 140 | +- Debug. [jkobject] |
| 141 | +- Adding tests. [jkobject] |
| 142 | +- Adding documentation. [jkobject] |
| 143 | + |
| 144 | + |
| 145 | +1.0.0 (2024-08-06) |
| 146 | +------------------ |
| 147 | +- Release: version 1.0.0 🚀 [jkobject] |
| 148 | +- Merge branch 'dev' into main. [jkobject] |
| 149 | +- Debug enrichment and centrality. [jkobject] |
| 150 | +- Adding new plotting. [jkobject] |
| 151 | +- Merge branch 'dev' of https://github.com/cantinilab/GRnnData into dev. |
| 152 | + [jkobject] |
| 153 | +- Adding background. [maestro-jk] |
| 154 | +- Better background. [jkobject] |
| 155 | +- Some more debugs. [jkobject] |
| 156 | +- Solve issues. [jkobject] |
| 157 | +- Wip on plotting gene networks. [jkobject] |
| 158 | +- Making it work on new hardware. [maestro-jk] |
| 159 | +- Tiny side case. [jkobject] |
| 160 | +- Better utils. [jkobject] |
| 161 | +- Working with mouse. [jkobject] |
| 162 | +- Some new methods. [jkobject] |
| 163 | +- Some more install requirements and new functions. [jkobject] |
| 164 | +- Some more docs and better deps. [jkobject] |
| 165 | +- Adding some more features. [jkobject] |
| 166 | +- Update README.md. [Jérémie Kalfon] |
| 167 | + |
| 168 | + |
| 169 | +1.0.1 (2024-01-11) |
| 170 | +------------------ |
| 171 | +- Making the release. [jkobject] |
| 172 | +- Working on improving grnndata. [jkobject] |
| 173 | +- Testing and creating a first version of GRnnData. [jkobject] |
| 174 | +- Finish switch to peotry. [jkobject] |
| 175 | +- Update LICENSE. [Jérémie Kalfon] |
| 176 | +- Improving and making it ready for first release. [jkobject] |
| 177 | +- Update. [jkobject] |
| 178 | +- Update extract_links to return output sorted by scores. [Rémi |
| 179 | + Trimbour] |
| 180 | +- Add mu file. [jkobject] |
| 181 | +- Merge pull request #1 from |
| 182 | + cantinilab/dependabot/github_actions/stefanzweifel/git-auto-commit- |
| 183 | + action-5. [Jérémie Kalfon] |
| 184 | + |
| 185 | + Bump stefanzweifel/git-auto-commit-action from 4 to 5 |
| 186 | +- ✅ Ready to clone and code. [dependabot[bot]] |
| 187 | +- Bump stefanzweifel/git-auto-commit-action from 4 to 5. |
| 188 | + [dependabot[bot]] |
| 189 | + |
| 190 | + Bumps [stefanzweifel/git-auto-commit-action](https://github.com/stefanzweifel/git-auto-commit-action) from 4 to 5. |
| 191 | + - [Release notes](https://github.com/stefanzweifel/git-auto-commit-action/releases) |
| 192 | + - [Changelog](https://github.com/stefanzweifel/git-auto-commit-action/blob/master/CHANGELOG.md) |
| 193 | + - [Commits](https://github.com/stefanzweifel/git-auto-commit-action/compare/v4...v5) |
| 194 | + |
| 195 | + --- |
| 196 | + updated-dependencies: |
| 197 | + - dependency-name: stefanzweifel/git-auto-commit-action |
| 198 | + dependency-type: direct:production |
| 199 | + update-type: version-update:semver-major |
| 200 | + ... |
| 201 | +- Merge pull request #3 from |
| 202 | + cantinilab/dependabot/github_actions/actions/setup-python-5. [Jérémie |
| 203 | + Kalfon] |
| 204 | + |
| 205 | + Bump actions/setup-python from 4 to 5 |
| 206 | +- ✅ Ready to clone and code. [dependabot[bot]] |
| 207 | +- Bump actions/setup-python from 4 to 5. [dependabot[bot]] |
| 208 | + |
| 209 | + Bumps [actions/setup-python](https://github.com/actions/setup-python) from 4 to 5. |
| 210 | + - [Release notes](https://github.com/actions/setup-python/releases) |
| 211 | + - [Commits](https://github.com/actions/setup-python/compare/v4...v5) |
| 212 | + |
| 213 | + --- |
| 214 | + updated-dependencies: |
| 215 | + - dependency-name: actions/setup-python |
| 216 | + dependency-type: direct:production |
| 217 | + update-type: version-update:semver-major |
| 218 | + ... |
| 219 | +- ✅ Ready to clone and code. [jkobject] |
| 220 | +- Initial commit. [Jérémie Kalfon] |
| 221 | + |
| 222 | + |
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