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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

[v0.6.1] - 2025-10-28

Fixed

  • The check for a negative z component of an ImagePoint3D instance is not correct. See Issue 39.

Changed

  • Removed get_x_coordinate and get_y_coordinate members from ImagePoint2D and ImagePoint3D, and get_z_coordinate from ImagePoint3D.

[v0.6.0] - 2025-03-21

Changed

  • Simplify compute_pixel_statistics, emitting just one collection of statistics rather than three; namely, the $z$-slice closest to a point will be used, plus/minus some optional slices of padding on above and below that slice.

[v0.5.1] - 2024-11-21

Added

  • __version__ attribute on the top-level package object

Changed

  • Parameter signal_column in compute_pixel_statistics is now channel_column.

[v0.5.0] - 2024-11-21

Added

  • ImagingChannel wrapper type
  • Cross-chanel signal extraction/analysis tool for images; see Issue 27.

Changed

  • Depend on v2.2.1 of numpydoc_decorator directly from PyPI, rather than our custom release from earlier.
  • Support Python 3.12

[v0.4.4] - 2024-04-19

Fixed

  • Fix the return type in signature of find_multiple_paths_by_fov.

[v0.4.3] - 2024-04-19

Added

  • Add type checking/hinting information to the package distribution.

[v0.4.2] - 2024-04-18

Changed

  • Using more updated version of numpydoc_decorator for our lab, tagged rather than just commit hashed

[v0.4.1] - 2024-04-17

Changed

  • Bumped up lower bound on numpydoc_generator dependency, for compatibility with downstream projects which use a feature not yet in a release version.

[v0.4.0] - 2024-04-17

Added

  • Types and functions related to geometry
  • Types and functions related to paths (pathtools)
  • ZARR tools (zarr_tools)
  • Some generally useful data types for genome biology (types)

Changed

  • Adopted ruff for formatting (rather than black) and for linting (rather than pylint).

Removed

  • All custom error types were removed; namely, absence of TensorFlow now will give ModuleNotFoundError (built-in) rather than a narrower error type.

[v0.3.0] - 2024-03-13

  • Made it so that PathWrapperException is always what arises when construction of a value of a refined path type fails, rather than having direct construction with a Path giving a TypeError as it was previously.

[v0.2.0] - 2023-08-01

Changed

  • Exposed names, mainly from pathtools and exceptions, at the package level, for more stable use in dependent projects.

[v0.1.0] - 2023-07-14

Added

  • This package, first release