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update test case
1 parent 37e45b6 commit 066dbdd

4 files changed

Lines changed: 7 additions & 5 deletions

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payload-gen-variant-processing/tests/expected/expected.sanger-wgs.filtered.snv.payload.json

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{
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"analysisType": {
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"name": "variant_processing"
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"name": "variant_annotating"
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},
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"studyId": "TEST-PR",
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"experiment": {
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],
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"files": [
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{
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"fileName": "TEST-PR.DO250183.SA610229.wgs.20200513.sanger-wgs.somatic.snv.open-filter.vcf.gz",
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"fileName": "TEST-PR.DO250183.SA610229.wgs.20200513.sanger-wgs.somatic.snv.annotation.vcf.gz",
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"fileType": "VCF",
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"fileSize": 23947,
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"fileMd5sum": "1ebce71c8231aeb7ac6c06c92adfd5db",
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"dataType": "Raw SNV Calls"
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},
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{
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"fileName": "TEST-PR.DO250183.SA610229.wgs.20200513.sanger-wgs.somatic.snv.open-filter.vcf.gz.tbi",
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"fileName": "TEST-PR.DO250183.SA610229.wgs.20200513.sanger-wgs.somatic.snv.annotation.vcf.gz.tbi",
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"fileType": "TBI",
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"fileSize": 185,
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"fileMd5sum": "7a8482dc43849a4ee8bdd4c9c77fae0c",
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"workflow_name": "Open Access Variant Filtering",
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"workflow_short_name": "open-filter",
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"workflow_version": "0.1.0",
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"run_id": "festering_davinci",
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"session_id": "33388531-767b-4fd4-ba84-1c6732983ae1",
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"run_id": "hopeful_wescoff",
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"session_id": "6f1137f4-7e04-4758-bf15-53936d76a1d3",
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"inputs": [
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{
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"input_analysis_id": "3414534a-47a4-492d-9453-4a47a4192d6d",
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payload-gen-variant-processing/tests/test-job-1.json

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"wf_short_name": "open-filter",
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"wf_version": "0.1.0",
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"controlled": true,
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"process_name": "annotation",
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"analysis_type": "variant_annotating",
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"publish_dir": "outdir",
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"cpus": 1,
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"mem": 0.5

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