Merge pull request #97 from icgc-argo/payload-gen-variant-calling.0.3.5.0

junjun-zhang · web-flow · commit 1058f4847d74 · 2020-10-22T15:03:27.000-04:00
tested successfully
diff --git a/tools/payload-gen-variant-calling/payload-gen-variant-calling.nf b/tools/payload-gen-variant-calling/payload-gen-variant-calling.nf
@@ -22,7 +22,7 @@
  */
 
 nextflow.enable.dsl = 2
-version = '0.3.4.0'
+version = '0.3.5.0'
 
 params.normal_analysis = ""
 params.tumour_analysis = ""
diff --git a/tools/payload-gen-variant-calling/payload-gen-variant-calling.py b/tools/payload-gen-variant-calling/payload-gen-variant-calling.py
@@ -47,7 +47,7 @@
     'ascat_metrics': ['Quality Control Metrics', 'Ploidy and Purity Estimation', ['ASCAT']],
     'genotyped_gender_metrics': ['Quality Control Metrics', 'Genotyping Inferred Gender', ['compareBamGenotypes']],
     'mutect_filtering_metrics': ['Quality Control Metrics', 'Mutect2 Filtering Stats', [], ['GATK-FilterMutectCalls']],
-    'mutect_callable_metrics': ['Quality Control Metrics', 'Mutect2 Callabe Stats', [], ['GATK-Mutect2']],
+    'mutect_callable_metrics': ['Quality Control Metrics', 'Mutect2 Callable Stats', [], ['GATK-Mutect2']],
 }
 
 workflow_full_name = {

Original file line number	Diff line number	Diff line change
`@@ -47,7 +47,7 @@`
`47`	`47`	`'ascat_metrics': ['Quality Control Metrics', 'Ploidy and Purity Estimation', ['ASCAT']],`
`48`	`48`	`'genotyped_gender_metrics': ['Quality Control Metrics', 'Genotyping Inferred Gender', ['compareBamGenotypes']],`
`49`	`49`	`'mutect_filtering_metrics': ['Quality Control Metrics', 'Mutect2 Filtering Stats', [], ['GATK-FilterMutectCalls']],`
`50`		`- 'mutect_callable_metrics': ['Quality Control Metrics', 'Mutect2 Callabe Stats', [], ['GATK-Mutect2']],`
	`50`	`+ 'mutect_callable_metrics': ['Quality Control Metrics', 'Mutect2 Callable Stats', [], ['GATK-Mutect2']],`
`51`	`51`	`}`
`52`	`52`
`53`	`53`	`workflow_full_name = {`