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fix a bug
1 parent 5e33a2b commit 239e32b

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payload-gen-rna-alignment/main.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -96,7 +96,7 @@ def insert_filename_friendly_rg_id(metadata):
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def get_rg_id_from_ubam_qc(tar, metadata):
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tar_basename = os.path.basename(tar) # TEST-PR.DO250122.SA610149.D0RE2_1_.6cae87bf9f05cdfaa4a26f2da625f3b2.lane.bam.fastqc.tgz
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md5sum_from_filename = tar_basename.split('.')[4]
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md5sum_from_filename = tar_basename.split('.')[-5]
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if not re.match(r'^[a-f0-9]{32}$', md5sum_from_filename):
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sys.exit('Error: ubam naming not expected %s' % tar_basename)
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