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update test jobs
1 parent 8a1c9cf commit 4a68795

5 files changed

Lines changed: 10 additions & 10 deletions

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payload-gen-rna-alignment/tests/test-job-1.json

Lines changed: 2 additions & 2 deletions
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"expected_output": "expected/expected.test-job-1.out.json",
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"aligner": "STAR",
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"analysis_type": "sequencing_alignment",
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"genome_annotation": "GENCODE v38",
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"genome_build": "GRCh38_hla_decoy_ebv",
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"genome_annotation": "GENCODE v40",
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"genome_build": "GRCh38_Verily_v1",
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"wf_name": "rna-seq-alignment",
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"wf_version": "0.1.0",
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"publish_dir": "outdir",

payload-gen-rna-alignment/tests/test-job-2.json

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"expected_output": "expected/expected.test-job-2.out.json",
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"aligner": "STAR",
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"analysis_type": "qc_metrics",
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"genome_annotation": "GENCODE v38",
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"genome_build": "GRCh38_hla_decoy_ebv",
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"genome_annotation": "GENCODE v40",
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"genome_build": "GRCh38_Verily_v1",
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"wf_name": "rna-seq-alignment",
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"wf_version": "0.1.0",
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"publish_dir": "outdir",

payload-gen-rna-alignment/tests/test-job-3.json

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"expected_output": "expected/expected.test-job-3.out.json",
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"aligner": "",
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"analysis_type": "qc_metrics",
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"genome_annotation": "GENCODE v38",
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"genome_build": "GRCh38_hla_decoy_ebv",
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"genome_annotation": "GENCODE v40",
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"genome_build": "GRCh38_Verily_v1",
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"wf_name": "rna-seq-alignment",
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"wf_version": "0.1.0",
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"publish_dir": "outdir",

payload-gen-rna-alignment/tests/test-job-4.json

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"expected_output": "expected/expected.test-job-4.out.json",
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"aligner": "hisat2",
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"analysis_type": "supplement",
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"genome_annotation": "GENCODE v38",
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"genome_build": "GRCh38_hla_decoy_ebv",
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"genome_annotation": "GENCODE v40",
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"genome_build": "GRCh38_Verily_v1",
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"wf_name": "rna-seq-alignment",
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"wf_version": "0.1.0",
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"publish_dir": "outdir",

payload-gen-rna-alignment/tests/test-job-5.json

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
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"expected_output": "expected/expected.test-job-5.out.json",
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"aligner": "hisat2",
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"analysis_type": "splice_junctions",
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"genome_annotation": "GENCODE v38",
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"genome_build": "GRCh38_hla_decoy_ebv",
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"genome_annotation": "GENCODE v40",
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"genome_build": "GRCh38_Verily_v1",
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"wf_name": "rna-seq-alignment",
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"wf_version": "0.1.0",
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"publish_dir": "outdir",

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