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payload-gen-rna-alignment/tests Expand file tree Collapse file tree Original file line number Diff line number Diff line change 77 "expected_output" : " expected/expected.test-job-1.out.json" ,
88 "aligner" : " STAR" ,
99 "analysis_type" : " sequencing_alignment" ,
10- "genome_annotation" : " GENCODE v38 " ,
11- "genome_build" : " GRCh38_hla_decoy_ebv " ,
10+ "genome_annotation" : " GENCODE v40 " ,
11+ "genome_build" : " GRCh38_Verily_v1 " ,
1212 "wf_name" : " rna-seq-alignment" ,
1313 "wf_version" : " 0.1.0" ,
1414 "publish_dir" : " outdir" ,
Original file line number Diff line number Diff line change 77 "expected_output" : " expected/expected.test-job-2.out.json" ,
88 "aligner" : " STAR" ,
99 "analysis_type" : " qc_metrics" ,
10- "genome_annotation" : " GENCODE v38 " ,
11- "genome_build" : " GRCh38_hla_decoy_ebv " ,
10+ "genome_annotation" : " GENCODE v40 " ,
11+ "genome_build" : " GRCh38_Verily_v1 " ,
1212 "wf_name" : " rna-seq-alignment" ,
1313 "wf_version" : " 0.1.0" ,
1414 "publish_dir" : " outdir" ,
Original file line number Diff line number Diff line change 66 "expected_output" : " expected/expected.test-job-3.out.json" ,
77 "aligner" : " " ,
88 "analysis_type" : " qc_metrics" ,
9- "genome_annotation" : " GENCODE v38 " ,
10- "genome_build" : " GRCh38_hla_decoy_ebv " ,
9+ "genome_annotation" : " GENCODE v40 " ,
10+ "genome_build" : " GRCh38_Verily_v1 " ,
1111 "wf_name" : " rna-seq-alignment" ,
1212 "wf_version" : " 0.1.0" ,
1313 "publish_dir" : " outdir" ,
Original file line number Diff line number Diff line change 66 "expected_output" : " expected/expected.test-job-4.out.json" ,
77 "aligner" : " hisat2" ,
88 "analysis_type" : " supplement" ,
9- "genome_annotation" : " GENCODE v38 " ,
10- "genome_build" : " GRCh38_hla_decoy_ebv " ,
9+ "genome_annotation" : " GENCODE v40 " ,
10+ "genome_build" : " GRCh38_Verily_v1 " ,
1111 "wf_name" : " rna-seq-alignment" ,
1212 "wf_version" : " 0.1.0" ,
1313 "publish_dir" : " outdir" ,
Original file line number Diff line number Diff line change 66 "expected_output" : " expected/expected.test-job-5.out.json" ,
77 "aligner" : " hisat2" ,
88 "analysis_type" : " splice_junctions" ,
9- "genome_annotation" : " GENCODE v38 " ,
10- "genome_build" : " GRCh38_hla_decoy_ebv " ,
9+ "genome_annotation" : " GENCODE v40 " ,
10+ "genome_build" : " GRCh38_Verily_v1 " ,
1111 "wf_name" : " rna-seq-alignment" ,
1212 "wf_version" : " 0.1.0" ,
1313 "publish_dir" : " outdir" ,
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