Merge pull request #85 from icgc-argo/payload-gen-variant-calling.0.3.2.0

update base docker image to address #84

Author: junjun-zhang

tools/payload-gen-variant-calling/Dockerfile

@@ -1,4 +1,4 @@
-FROM python:3.7.5-slim-buster
+FROM python:3.7.9
 
 RUN groupadd -g 1000 ubuntu &&\
     useradd -l -u 1000 -g ubuntu ubuntu &&\

tools/payload-gen-variant-calling/payload-gen-variant-calling.nf

@@ -22,7 +22,7 @@
  */
 
 nextflow.enable.dsl = 2
-version = '0.3.1.0'
+version = '0.3.2.0'
 
 params.normal_analysis = ""
 params.tumour_analysis = ""

tools/payload-gen-variant-calling/tests/checker.nf

@@ -31,7 +31,7 @@ params.wf_short_name = ""
 params.wf_version = ""
 params.cpus = 1
 params.mem = 1  // GB
-params.publish_dir = "out"
+params.publish_dir = "outdir"
 
 include { payloadGenVariantCalling } from "../payload-gen-variant-calling" params(params)