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47 | 47 | 'genome_aln': ['Sequencing Reads', 'Aligned Reads', ['Genome Alignment'], ['STAR'], ['HiSAT2']], |
48 | 48 | 'transcriptome_aln': ['Sequencing Reads', 'Aligned Reads', ['transcriptome Alignment'], ['STAR'], ['HiSAT2']], |
49 | 49 | 'chimeric_aln': ['Sequencing Reads', 'Aligned Reads', ['Chimeric Alignment'], ['STAR'], ['HiSAT2']], |
50 | | - 'splice_junctions': ['Transcriptome Profiling', 'Splice Junctions', None, ['STAR'], ['HiSAT2']], |
| 50 | + 'splice_junctions': ['Transcriptome Profiling', 'Splice Junctions', [None], ['STAR'], ['HiSAT2']], |
51 | 51 | 'fastqc': ['Quality Control Metrics', 'Sequencing QC', ['Read Group Metrics'], ['FastQC'], ['FastQC']], |
52 | 52 | 'collectrnaseqmetrics': ['Quality Control Metrics', 'Aligned Reads QC', ['Alignment Metrics'], ['Picard:CollectRnaSeqMetrics'], ['Picard:CollectRnaSeqMetrics']], |
53 | 53 | 'duplicates_metrics': ['Quality Control Metrics', 'Aligned Reads QC', ['Duplicates Metrics'], ['biobambam2:bammarkduplicates2'], ['biobambam2:bammarkduplicates2']], |
54 | 54 | 'aln_metrics': ['Quality Control Metrics', 'Aligned Reads QC', ['Alignment Metrics'], ['STAR'], ['HiSAT2']], |
55 | | - 'supplement': ['Supplement', 'Running Logs', None, ['STAR'], ['HiSAT2']] |
| 55 | + 'supplement': ['Supplement', 'Running Logs', [None], ['STAR'], ['HiSAT2']] |
56 | 56 | } |
57 | 57 |
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58 | 58 | def calculate_size(file_path): |
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