Merge pull request #156 from icgc-argo-workflows/payload-gen-seq-experiment@0.6.0.1

[release]

Author: edsu7

payload-gen-seq-experiment/main.py

@@ -260,7 +260,11 @@ def main(metadata, extra_info=dict()):
 
     # get file of the payload
 
-    optional_file_fields=["EGAS","EGAC","EGAP","EGAN","EGAR","EGAX","EGAZ","EGAD","EGAB","EGAF"]
+    optional_file_fields=[
+        "ega_file_id","ega_dataset_id","ega_experiment_id","ega_sample_id","ega_study_id",
+        "ega_run_id","ega_policy_id","ega_analysis_id","ega_submission_id","ega_dac_id"
+        ]
+        
     for input_file in metadata.get("files"):
         payload['files'].append(
             {

payload-gen-seq-experiment/tests/input/208c5ea6-c17a-4a63-981e-4bb91d3119f2.sequencing_experiment.payload.json

@@ -81,7 +81,8 @@
       "dataType": "Submitted Reads",
       "info": {
         "data_category": "Sequencing Reads"
-      }
+      },
+      "ega_file_id": "EGAF000001"
     }
   ]
 }