updated score/song .nf

- changed singularity mount to `task/process` directory

Author: edsu7

.DS_Store

@@ -35,7 +35,7 @@ process scoreUpload {
     container "${ params.score_container ?: params.container}:${params.score_container_version ?: params.container_version}"
 
     if (workflow.containerEngine == "singularity") {
-        containerOptions "--bind ${workDir}:/score-client/logs"
+        containerOptions "--bind \$(pwd):/score-client/logs"
     }
 
     tag "${analysis_id}"

process/score_upload.nf

@@ -38,7 +38,7 @@ process songManifest {
     tag "${analysis_id}"
 
     if (workflow.containerEngine == "singularity") {
-        containerOptions "--bind ${workDir}:/song-client/logs"
+        containerOptions "--bind \$(pwd):/song-client/logs"
     }
 
     input:

process/song_manifest.nf

@@ -34,7 +34,7 @@ process songPublish {
     container "${ params.song_container ?: params.container}:${params.song_container_version ?: params.container_version}"
 
     if (workflow.containerEngine == "singularity") {
-        containerOptions "--bind ${workDir}:/song-client/logs"
+        containerOptions "--bind \$(pwd):/song-client/logs"
     }
 
     tag "${analysis_id}"

process/song_publish.nf

@@ -34,7 +34,7 @@ process songSubmit {
     container "${ params.song_container ?: params.container}:${params.song_container_version ?: params.container_version}"
 
     if (workflow.containerEngine == "singularity") {
-        containerOptions "--bind ${workDir}:/song-client/logs"
+        containerOptions "--bind \$(pwd):/song-client/logs"
     }
 
     tag "${study_id}"