Fix/main test analysis version (#28)

lepsalex · web-flow · commit 7d711f318c50 · 2020-11-11T11:21:07.000-05:00
* remove type version before upload

* update analysis_type to string

* satisfying input enum
diff --git a/main.nf b/main.nf
@@ -14,15 +14,15 @@ process analysisToPayload() {
     script:
         """
         cat $analysis_json
-        cat $analysis_json | jq 'del(.analysisId, .analysisState) + {"workflow": {
+        cat $analysis_json | jq 'del(.analysisId, .analysisState, .analysisType.version) + {"workflow": {
             "workflow_name": "nextflow-data-processing-utility-tools",
             "workflow_version": "$workflow.revision",
             "genome_build": "GRCh38_hla_decoy_ebv",
             "run_id": "$workflow.runName",
             "session_id": "$workflow.sessionId",
             "inputs": [
                 {
-                    "analysis_type": .analysisType,
+                    "analysis_type": "sequencing_experiment",
                     "input_analysis_id": .analysisId
                 }
             ]

Original file line number	Diff line number	Diff line change
`@@ -14,15 +14,15 @@ process analysisToPayload() {`
`14`	`14`	`script:`
`15`	`15`	`"""`
`16`	`16`	`cat $analysis_json`
`17`		`- cat $analysis_json \| jq 'del(.analysisId, .analysisState) + {"workflow": {`
	`17`	`+ cat $analysis_json \| jq 'del(.analysisId, .analysisState, .analysisType.version) + {"workflow": {`
`18`	`18`	`"workflow_name": "nextflow-data-processing-utility-tools",`
`19`	`19`	`"workflow_version": "$workflow.revision",`
`20`	`20`	`"genome_build": "GRCh38_hla_decoy_ebv",`
`21`	`21`	`"run_id": "$workflow.runName",`
`22`	`22`	`"session_id": "$workflow.sessionId",`
`23`	`23`	`"inputs": [`
`24`	`24`	`{`
`25`		`- "analysis_type": .analysisType,`
	`25`	`+ "analysis_type": "sequencing_experiment",`
`26`	`26`	`"input_analysis_id": .analysisId`
`27`	`27`	`}`
`28`	`28`	`]`