Merge pull request #33 from icgc-argo/song-score-download@2.6.1

[release]

Author: junjun-zhang

song-score-download/main.nf

@@ -21,7 +21,7 @@
 */
 
 nextflow.enable.dsl = 2
-version = '2.6.0'  // package version
+version = '2.6.1'
 
 // universal params go here, change default value as needed
 params.publish_dir = ""  // set to empty string will disable publishDir
@@ -71,8 +71,8 @@ score_params = [
 ]
 
 
-include { songGetAnalysis } from './local_modules/song-get-analysis' params(song_params)
-include { scoreDownload } from './local_modules/score-download' params(score_params)
+include { songGetAnalysis as songGet } from './local_modules/song-get-analysis' params(song_params)
+include { scoreDownload as scoreDn } from './local_modules/score-download' params(score_params)
 
 
 // please update workflow code as needed
@@ -82,12 +82,12 @@ workflow SongScoreDownload {
     analysis_id
 
   main:
-    songGetAnalysis(study_id, analysis_id)
-    scoreDownload(songGetAnalysis.out.json, study_id, analysis_id)
+    songGet(study_id, analysis_id)
+    scoreDn(songGet.out.json, study_id, analysis_id)
 
   emit:
-    analysis_json = songGetAnalysis.out.json
-    files = scoreDownload.out.files
+    analysis_json = songGet.out.json
+    files = scoreDn.out.files
 }
 
 

song-score-download/pkg.json

@@ -1,6 +1,6 @@
 {
     "name": "song-score-download",
-    "version": "2.6.0",
+    "version": "2.6.1",
     "description": "SONG/SCORE download",
     "main": "main.nf",
     "deprecated": false,

song-score-download/tests/checker.nf

@@ -25,7 +25,7 @@
 */
 
 nextflow.enable.dsl = 2
-version = '2.6.0'  // package version
+version = '2.6.1'  // package version
 
 // universal params
 params.publish_dir = ""
@@ -51,7 +51,7 @@ params.score_url = "https://score.rdpc-qa.cancercollaboratory.org"
 params.score_api_token = ""
 
 
-include { SongScoreDownload } from '../main'
+include { SongScoreDownload as SSDn } from '../main'
 
 
 workflow checker {
@@ -60,7 +60,7 @@ workflow checker {
     analysis_id
 
   main:
-    SongScoreDownload(
+    SSDn(
       study_id,
       analysis_id
     )