fix to provide the song/score docker versions from params

Author: lindaxiang

process/score_download.nf

@@ -34,8 +34,8 @@ process scoreDownload {
     cpus params.cpus
     memory "${params.mem} GB"
 
-    container "overture/score:${params.container_version}"
-    publishDir "${params.publish_dir}/${task.process.replaceAll(':', '_')}", mode: "copy", enabled: params.publish_dir
+    container "overture/score:${params.score_container_version ?: params.container_version}"
+    publishDir "${params.publish_dir}/${task.process.replaceAll(':', '_')}", mode: "copy", enabled: params.publish_dir ? true : false
 
     label "scoreDownload"
     tag "${analysis_id}"

process/score_upload.nf

@@ -31,7 +31,7 @@ process scoreUpload {
     cpus params.cpus
     memory "${params.mem} GB"
 
-    container "overture/score:${params.container_version}"
+    container "overture/score:${params.score_container_version ?: params.container_version}"
 
     tag "${analysis_id}"
 

process/song_get_analysis.nf

@@ -32,8 +32,8 @@ process songGetAnalysis {
     cpus params.cpus
     memory "${params.mem} GB"
 
-    container "overture/song-client:${params.container_version}"
-    publishDir "${params.publish_dir}/${task.process.replaceAll(':', '_')}", mode: "copy", enabled: params.publish_dir
+    container "overture/song-client:${params.song_container_version ?: params.container_version}"
+    publishDir "${params.publish_dir}/${task.process.replaceAll(':', '_')}", mode: "copy", enabled: params.publish_dir ? true : false
 
     tag "${analysis_id}"
 

process/song_manifest.nf

@@ -27,14 +27,14 @@ process songManifest {
         return params.max_retries ? 'retry' : 'finish'
     }
 
-    publishDir "${params.publish_dir}/${task.process.replaceAll(':', '_')}", mode: "copy", enabled: params.publish_dir
+    publishDir "${params.publish_dir}/${task.process.replaceAll(':', '_')}", mode: "copy", enabled: params.publish_dir ? true : false
 
     pod = [secret: workflow.runName + "-secret", mountPath: "/tmp/rdpc_secret"]
 
     cpus params.cpus
     memory "${params.mem} GB"
 
-    container "overture/song-client:${params.container_version}"
+    container "overture/song-client:${params.song_container_version ?: params.container_version}"
 
     tag "${analysis_id}"
 

process/song_publish.nf

@@ -30,7 +30,7 @@ process songPublish {
     cpus params.cpus
     memory "${params.mem} GB"
 
-    container "overture/song-client:${params.container_version}"
+    container "overture/song-client:${params.song_container_version ?: params.container_version}"
 
     tag "${analysis_id}"
 

process/song_submit.nf

@@ -30,7 +30,7 @@ process songSubmit {
     cpus params.cpus
     memory "${params.mem} GB"
 
-    container "overture/song-client:${params.container_version}"
+    container "overture/song-client:${params.song_container_version ?: params.container_version}"
 
     tag "${study_id}"
     label "songSubmit"