fix the version, rm unneeded files

Author: junjun-zhang

song-score-upload/local_modules/demo-copy-file.nf

@@ -0,0 +1 @@
+../../process/score_upload.nf

song-score-upload/local_modules/score_upload.nf

@@ -0,0 +1 @@
+../../process/song_manifest.nf

song-score-upload/local_modules/song_manifest.nf

@@ -0,0 +1 @@
+../../process/song_publish.nf

song-score-upload/local_modules/song_publish.nf

@@ -0,0 +1 @@
+../../process/song_submit.nf

song-score-upload/local_modules/song_submit.nf

@@ -20,7 +20,7 @@
 */
 
 nextflow.enable.dsl = 2
-version = '0.2.6'  // package version
+version = '2.6.0'  // package version
 
 // universal params go here, change default value as needed
 params.container = ""
@@ -34,8 +34,6 @@ params.publish_dir = ""  // set to empty string will disable publishDir
 params.input_file = ""
 params.cleanup = true
 
-include { demoCopyFile } from "./local_modules/demo-copy-file"
-include { cleanupWorkdir; getSecondaryFiles; getBwaSecondaryFiles } from './wfpr_modules/github.com/icgc-argo/demo-wfpkgs/demo-utils@1.3.0/main.nf' params([*:params, 'cleanup': false])
 
 
 // please update workflow code as needed

song-score-upload/main.nf

@@ -1,6 +1,6 @@
 {
     "name": "song-score-upload",
-    "version": "0.2.6",
+    "version": "2.6.0",
     "description": "SONG/SCORE upload",
     "main": "main.nf",
     "deprecated": false,
@@ -14,14 +14,14 @@
         "type": "git",
         "url": "https://github.com/icgc-argo/nextflow-data-processing-utility-tools.git"
     },
-    "dependencies": [
-        "github.com/icgc-argo/demo-wfpkgs/demo-utils@1.3.0"
-    ],
+    "dependencies": [],
     "devDependencies": [],
     "contributors": [
         {
-            "name": "Junjun Zhang",
-            "email": "junjun.ca@gmail.com"
+            "name": "Alex Lepsa"
+        },
+        {
+            "name": "Junjun Zhang"
         }
     ],
     "license": "Apache License 2.0",