Fox for eden on py3.12

Add test on short pulse hh example

Author: pgleeson

.github/workflows/non-omv.yml

@@ -27,4 +27,4 @@ jobs:
         pip install scipy matplotlib
         cd Tutorial/Source
         python HodgkinHuxley.py # test in current clamp mode
-        python HodgkinHuxley.py -vclamp # test in voltrage clamp mode
+        python HodgkinHuxley.py -vclamp # test in voltage clamp mode

.github/workflows/omv-ci.yml

@@ -29,6 +29,8 @@ jobs:
       run: |
         pip install git+https://github.com/OpenSourceBrain/osb-model-validation
         pip install scipy sympy matplotlib cython pandas tables
+
+        pip install setuptools --upgrade # needed for eden on Python 3.12
         
     - name: Run OMV tests on engine ${{ matrix.engine }}
       run: |

Tutorial/Source/test/.test.python.omt

@@ -1,4 +1,4 @@
-# Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation
+# Script for running automated tests on OSB, see https://github.com/OpenSourceBrain/osb-model-validation
 
 # Note: this is not really running with Brian2, it's just a way to get a general Python script tested on OMV...
 

Tutorial/Source/test/.test.short.mep

@@ -0,0 +1,6 @@
+system: Testing a single compartment cell
+
+experiments:
+  Current clamp:
+    expected:
+      spike times: [34.4625] 

Tutorial/Source/test/.test.short.python.omt

@@ -0,0 +1,19 @@
+# Script for running automated tests on OSB, see https://github.com/OpenSourceBrain/osb-model-validation
+
+# Note: this is not really running with Brian2, it's just a way to get a general Python script tested on OMV...
+
+target: TestShortPulse.py
+engine: Brian2
+mep: .test.short.mep
+experiments:
+  Current clamp:
+    observables:
+      spike times:
+        file:
+          path: hh_py_v.dat
+          columns: [0,1]
+          scaling: [1, 1]
+        spike detection:
+          method: threshold
+          threshold: 0
+        tolerance: 0.001681202059472487

Tutorial/Source/test/TestShortPulse.py

@@ -0,0 +1,16 @@
+import sys
+import os
+
+# allow importing a module from the parent directory
+sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), '..')))
+from HodgkinHuxley import HodgkinHuxley
+
+runner = HodgkinHuxley(runMode='iclamp', t_n=50, delta_t=0.0125, 
+        I_inj_amplitude=66, I_inj_duration=.1, I_inj_delay=30)
+
+runner.simulate()
+
+
+
+
+