Test on Moose

Author: pgleeson

.gitignore

@@ -26,3 +26,4 @@ Tutorial/Source/*json
 /Tutorial2/NeuroML2/*.hoc
 /Tutorial/Source/LEMS_HH_Simulation_netpyne.py
 /Tutorial/Source/LEMS_HH_SingleAP_brian2.py
+/Tutorial/Source/LEMS*_moose.py

.travis.yml

@@ -12,7 +12,12 @@ addons:
     - python-scipy 
     - python-lxml
     - libhdf5-7
-    - python-tables
+    - python-tables   
+        # Requirements for Moose
+    - python-dev
+    - libhdf5-dev
+    - libgsl0-dev 
+    - g++
 
 language: python
 python: 2.7
@@ -27,6 +32,7 @@ env:
     - OMV_ENGINE=jNeuroML_NetPyNE
     - OMV_ENGINE=jNeuroML_PyNN_NEURON
     - OMV_ENGINE=jNeuroML_Brian2
+    - OMV_ENGINE=jNeuroML_Moose
 
 install: 
     - pip install git+https://github.com/OpenSourceBrain/osb-model-validation

Tutorial/Source/test/.test.jnmlmoose.omt

@@ -0,0 +1,17 @@
+# Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation
+
+target: ../LEMS_HH_Simulation.xml 
+engine: jNeuroML_Moose
+mep: .test.mep
+experiments:
+  Current clamp:
+    observables:
+      spike times:
+        file: 
+          path: ../hh_v.dat
+          columns: [0,1]
+          scaling: [1000, 1000]
+        spike detection: 
+          method: threshold
+          threshold: 0
+        tolerance: 0.00147105180204