Testing with netpyne

Author: pgleeson

.gitignore

@@ -24,3 +24,4 @@ Tutorial/Source/*json
 /Tutorial2/NeuroML2/*.dat
 /Tutorial2/NeuroML2/*nrn.py
 /Tutorial2/NeuroML2/*.hoc
+/Tutorial/Source/LEMS_HH_Simulation_netpyne.py

.travis.yml

@@ -7,6 +7,7 @@ env:
     - OMV_ENGINE=jNeuroML
     - OMV_ENGINE=jNeuroML_NEURON
     - OMV_ENGINE=jNeuroML_validate
+    - OMV_ENGINE=jNeuroML_NetPyNE
 
 install: 
     - pip install git+https://github.com/OpenSourceBrain/osb-model-validation

Tutorial/Source/test/.test.jnmlnetpyne.omt

@@ -0,0 +1,17 @@
+# Script for running automated tests on OSB using Travis-CI, see https://github.com/OpenSourceBrain/osb-model-validation
+
+target: ../LEMS_HH_Simulation.xml 
+engine: jNeuroML_NetPyNE
+mep: .test.mep
+experiments:
+  Current clamp:
+    observables:
+      spike times:
+        file: 
+          path: ../hh_v.dat
+          columns: [0,1]
+          scaling: [1000, 1000]
+        spike detection: 
+          method: threshold
+          threshold: 0
+        tolerance: 0.0