Text tweaks

Author: pgleeson

Tutorial/Source/HodgkinHuxley.py

@@ -325,7 +325,7 @@ def Main(self, init_values=[-64.99584, 0.05296, 0.59590, 0.31773]):
                     plt.title('Simulation of Hodgkin Huxley model neuron')
                 plt.plot(self.t, gna, 'c', label='$g_{Na}$')
                 plt.plot(self.t, gk, 'y', label='$g_{K}$')
-                plt.ylabel('Cond. dens')
+                plt.ylabel('Cond. dens ($mS/cm^2$)')
                 plt.legend()
                 self.plot_count += 1
 
@@ -338,7 +338,7 @@ def Main(self, init_values=[-64.99584, 0.05296, 0.59590, 0.31773]):
                 plt.plot(self.t, ina, 'c', label='$I_{Na}$')
                 plt.plot(self.t, ik, 'y', label='$I_{K}$')
                 plt.plot(self.t, il, 'm', label='$I_{L}$')
-                plt.ylabel('Current')
+                plt.ylabel('Current ($\\mu{A}/cm^2$)')
                 plt.legend()
                 self.plot_count += 1
 
@@ -349,7 +349,7 @@ def Main(self, init_values=[-64.99584, 0.05296, 0.59590, 0.31773]):
                     ax1 = plt.subplot(self.num_plots,1,self.plot_count + 1)
                     plt.title('Simulation of Hodgkin Huxley model neuron')
                 plt.plot(self.t, V, 'k')
-                plt.ylabel('V (mV)')
+                plt.ylabel('$V_{m}$ (mV)')
                 plt.xlabel('t (ms)')
                 if not self.is_vclamp(): plt.ylim(-85,60)
                 #plt.ylim(-1, 40)

notebooks/Python_HH_version/ui_widget.py

@@ -206,11 +206,11 @@ def highlight_slider():
 
 #plot selectors
 header_plotting = ipywidgets.HTMLMath(value=r"<b> Select plots</b>")
-injected_current_plot_value = ipywidgets.Checkbox(value=True, description="Current injection plot", disabled=False,)
+injected_current_plot_value = ipywidgets.Checkbox(value=True, description="Current injection", disabled=False,)
 gating_plot_value = ipywidgets.Checkbox(value=True, description="Gating variables", disabled=False,)
-cond_dens_plot_value = ipywidgets.Checkbox(value=True, description="Conductance density", disabled=False,)
-current_plot_value = ipywidgets.Checkbox(value=True, description="Current", disabled=False,)
-memb_pot_plot_value = ipywidgets.Checkbox(value=True, description="Memb pot", disabled=False,)
+cond_dens_plot_value = ipywidgets.Checkbox(value=True, description="Conductance densities", disabled=False,)
+current_plot_value = ipywidgets.Checkbox(value=True, description="Current densities", disabled=False,)
+memb_pot_plot_value = ipywidgets.Checkbox(value=True, description="Membrane potential", disabled=False,)
 plot_selection_row=ipywidgets.VBox([header_plotting, ipywidgets.HBox([injected_current_plot_value, gating_plot_value, cond_dens_plot_value]), ipywidgets.HBox([current_plot_value, memb_pot_plot_value])])
 
 #layout vertically all the widgets defined above