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Tutorial/index.rst

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You can adapt this file completely to your liking, but it should at least
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contain the root `toctree` directive.
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Welcome to Hodgkin Huxley Tutorial
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Welcome to the Hodgkin Huxley Tutorial
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===============================================
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This tutorial gives an introduction to the `Hodgkin-Huxley model <https://en.wikipedia.org/wiki/Hodgkin%E2%80%93Huxley_model>`_ by use of executable example implementations in Python and `NeuroML <http://www.neuroml.org>`_.
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This tutorial gives an introduction to the `Hodgkin-Huxley model <https://en.wikipedia.org/wiki/Hodgkin%E2%80%93Huxley_model>`_ through the use of executable example implementations in Python and `NeuroML <http://www.neuroml.org>`_.
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**The aims of this tutorial are:**
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What is the Hodgkin-Huxley model?
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=================================
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`From Wikipedia <https://en.wikipedia.org/wiki/Hodgkin%E2%80%93Huxley_model>`_:
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The Hodgkin–Huxley model is a mathematical model that describes how action potentials in neurons
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`From Wikipedia <https://en.wikipedia.org/wiki/Hodgkin%E2%80%93Huxley_model>`_:
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The Hodgkin–Huxley model is a mathematical model that describes how action potentials in neurons
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are initiated and propagated.
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The model describes represents the electrical properties of
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excitable membranes as typical electrical circuit components. For instance,
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the cell's membrane is modeled as a capacitor, and voltage-dependent
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the cell's membrane is modeled as a capacitor, and voltage-dependent
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conductances stand in for what are now known to be voltage-gated ion
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channels.
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For a detailed run through of the Hodgkin-Huxley model's electronics, math and
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biology, take a look at the `Electrophysiology page <_static/Electrophysiology.html>`_.
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For a detailed run through of the Hodgkin-Huxley model's electronics, math and
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biology, take a look at the `Electrophysiology page <_static/Electrophysiology.html>`_.
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After you understand the electronic model there, check out the
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After you understand the electronic model there, check out the
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`code walkthrough <_static/Tutorial.html>`_ to see an example
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implementation of the Hodgkin-Huxley model in Python, using a cell
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modeled in `NeuroML2 <https://www.neuroml.org/neuromlv2>`_.
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to get an understanding of another biological-electronic equivalence
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that is useful in describing ion channel and cell models.
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There are also some `exercises <_static/Exercises.html>`_ you can complete to get a feel for the model. These
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There are also some `exercises <_static/Exercises.html>`_ you can complete to get a feel for the model. These
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can be completed using either the Python or NeuroML versions.
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Table of Contents:
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_toc/iv_curve
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_toc/Exercises
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_toc/Source
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