From 8f846add2a4c45f82323e3c7ceb1faa705eecfdf Mon Sep 17 00:00:00 2001 From: "Ankur Sinha (Ankur Sinha Gmail)" Date: Thu, 30 Oct 2025 11:35:06 +0000 Subject: [PATCH 1/3] feat(hh): disable tightlayout --- Tutorial/Source/HodgkinHuxley.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/Tutorial/Source/HodgkinHuxley.py b/Tutorial/Source/HodgkinHuxley.py index ebb3763..8be38c9 100644 --- a/Tutorial/Source/HodgkinHuxley.py +++ b/Tutorial/Source/HodgkinHuxley.py @@ -389,7 +389,8 @@ def simulate(self, init_values=[-64.99584, 0.05296, 0.59590, 0.31773]): #plt.ylim(-1, 40) self.plot_count += 1 - plt.tight_layout() + # causes errors with the TeX parsing + # plt.tight_layout() plt.show() if __name__ == '__main__': From f41a59adc42a16915006abcd69c3b03ddd39a86d Mon Sep 17 00:00:00 2001 From: Padraig Gleeson Date: Sat, 28 Mar 2026 14:28:01 +0000 Subject: [PATCH 2/3] Update CI workflow to use newer action versions --- .github/workflows/omv-ci.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/omv-ci.yml b/.github/workflows/omv-ci.yml index 3585ce8..26f2ae0 100644 --- a/.github/workflows/omv-ci.yml +++ b/.github/workflows/omv-ci.yml @@ -18,10 +18,10 @@ jobs: engine: [ jNeuroML_Brian2, jNeuroML, jNeuroML_NEURON, jNeuroML_NetPyNE, jNeuroML_EDEN, jNeuroML_validate, jNeuroML_PyNN_NEURON, Brian2 ] # jNeuroML_Moose disable moose for now steps: - - uses: actions/checkout@v4 + - uses: actions/checkout@v6 - name: Set up Python ${{ matrix.python-version }} - uses: actions/setup-python@v5 + uses: actions/setup-python@v6 with: python-version: ${{ matrix.python-version }} @@ -30,7 +30,7 @@ jobs: pip install git+https://github.com/OpenSourceBrain/osb-model-validation pip install scipy sympy matplotlib cython pandas tables - pip install setuptools --upgrade # needed for eden on Python 3.12 + pip install setuptools==80 # needed for eden on Python 3.12 - name: Run OMV tests on engine ${{ matrix.engine }} run: | From 1f86e928034782ce27aa79bff62bc37b575fc2d9 Mon Sep 17 00:00:00 2001 From: Padraig Gleeson Date: Mon, 13 Apr 2026 11:02:58 +0100 Subject: [PATCH 3/3] Update Python version matrix in CI workflow --- .github/workflows/omv-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/omv-ci.yml b/.github/workflows/omv-ci.yml index 26f2ae0..0011815 100644 --- a/.github/workflows/omv-ci.yml +++ b/.github/workflows/omv-ci.yml @@ -14,7 +14,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: [ "3.10", "3.12" ] + python-version: [ "3.12", "3.13" ] engine: [ jNeuroML_Brian2, jNeuroML, jNeuroML_NEURON, jNeuroML_NetPyNE, jNeuroML_EDEN, jNeuroML_validate, jNeuroML_PyNN_NEURON, Brian2 ] # jNeuroML_Moose disable moose for now steps: