Merge pull request #843 from pyiron/bump-semantikon

Bump semantikon

Author: liamhuber

.binder/environment.yml

@@ -16,6 +16,6 @@ dependencies:
 - python >=3.11,<3.14
 - python-graphviz =0.21
 - rdflib =7.6.0
-- semantikon =1.0.0
+- semantikon =1.1.0
 - toposort =1.10
 - typeguard =4.5.1

.ci_support/environment.yml

@@ -16,6 +16,6 @@ dependencies:
 - python >=3.11,<3.14
 - python-graphviz =0.21
 - rdflib =7.6.0
-- semantikon =1.0.0
+- semantikon =1.1.0
 - toposort =1.10
 - typeguard =4.5.1

.ci_support/lower_bound.yml

@@ -18,6 +18,6 @@ dependencies:
 - pyiron_snippets =1.2.1
 - python-graphviz =0.20.3
 - rdflib =7.1.4
-- semantikon =1.0.0
+- semantikon =1.1.0
 - toposort =1.10
 - typeguard =4.2.0

docs/environment.yml

@@ -22,6 +22,6 @@ dependencies:
 - python >=3.11,<3.14
 - python-graphviz =0.21
 - rdflib =7.6.0
-- semantikon =1.0.0
+- semantikon =1.1.0
 - toposort =1.10
 - typeguard =4.5.1

notebooks/ontological_workflows.ipynb

@@ -45,7 +45,7 @@ dependencies = [
     "pint==0.25.3",
     "pyiron_snippets==1.2.1",
     "rdflib==7.6.0",
-    "semantikon==1.0.0",
+    "semantikon==1.1.0",
     "toposort==1.10",
     "typeguard==4.5.1",
 ]

pyproject.toml

@@ -807,14 +807,11 @@ def test_external_knowledge(self):
                 external_knowledge.add((EX.Input, rdflib.RDF.type, onto.OWL.Class))
                 external_knowledge.add((EX.NotInput, rdflib.RDF.type, onto.OWL.Class))
 
-                self.assertTrue(  # PENDING UPDATE
+                self.assertFalse(
                     validate_workflow(node, knowledge=external_knowledge)[0],
                     msg="But if we have knowledge that the two URIs are disjoint, then "
                     "we know at the recipe level that the parent _cannot_ fulfill the "
-                    "URI requirement of the child (for I-I; vice versa for O-O)"
-                    "-- is what I wish the message was here; this feature isn't "
-                    "released yet, so this is testing an opposite. Once this fails, "
-                    "update the test and add an example to the notebook.",
+                    "URI requirement of the child (for I-I; vice versa for O-O)",
                 )
 
     def test_restrictions(self):