fixed transiesta calls

Signed-off-by: Nick Papior <nickpapior@gmail.com>

Author: zerothi

TS_02/run.ipynb

@@ -69,20 +69,20 @@
     "4. All the commands required for this example can be executed like this:\n",
     "\n",
     "    ```\n",
-    "    transiesta RUN_ELEC.fdf > ELEC.out\n",
+    "    siesta --electrode RUN_ELEC.fdf > ELEC.out\n",
     "    cd TS_0\n",
     "    cp ../C.psf .\n",
-    "    transiesta ../RUN.fdf > TS.out\n",
+    "    siesta ../RUN.fdf > TS.out\n",
     "    # Check that the charge is converged etc.\n",
     "    cp siesta.TSDE ../TS_0.5/\n",
     "    cd ../TS_0.5\n",
     "    cp ../C.psf .\n",
-    "    transiesta -V 0.5:eV ../RUN.fdf > TS.out\n",
+    "    siesta -V 0.5:eV ../RUN.fdf > TS.out\n",
     "    # Check that it has converged...\n",
     "    cp siesta.TSDE ../TS_1.0/\n",
     "    cd ../TS_1.0\n",
     "    cp ../C.psf .\n",
-    "    transiesta -V 1:eV ../RUN.fdf > TS.out\n",
+    "    siesta -V 1:eV ../RUN.fdf > TS.out\n",
     "    # Check that it has converged...\n",
     "    ```\n",
     "  After every calculation go through the output to ensure everything is well behaved. Note that the output of a bias calculation is different from a non-bias calculation, they are more detailed.\n",