presentatian clean-up

Author: zerothi

presentations/01/electrodes.tex

@@ -413,10 +413,10 @@ \subsection{Electrodes}
         }
         \uncover<3->{
             \fill (.5,0) circle (\mysize) node[above right] {1};
-            \fill (1.5,0) circle (\mysize) node[above right] {2};
-            \fill (2.5,0) circle (\mysize) node[above right] {3};
-            \fill (.5,1) circle (\mysize) node[above right] {4};
-            \fill (1.5,1) circle (\mysize) node[above right] {5};
+            \fill (1.5,0) circle (\mysize) node[above right] {3};
+            \fill (2.5,0) circle (\mysize) node[above right] {5};
+            \fill (.5,1) circle (\mysize) node[above right] {2};
+            \fill (1.5,1) circle (\mysize) node[above right] {4};
             \fill (2.5,1) circle (\mysize) node[above right] {6};
         }
         \foreach \x in {-2.5,-1.5,-.5,3.5,4.5,5.5} {

presentations/01/negf.tex

@@ -150,8 +150,8 @@ \subsection{Transmission}
 
     The sum of bond-currents crossing \emph{any} device cross-section is equal to the
     current between the leads. Without the prefactor $e/h$ this also applies for the
-    bond-transmissions\footnote{TBtrans calculates bond-\emph{transmissions}, although
-        they are named \emph{currents}.}.
+    bond-transmissions\footnote{TBtrans calculates bond-\emph{transmissions} (without the
+        prefactor $e/h$), although they are named \emph{currents}.}.
 
     The bond-currents obey Kirchoff's laws.
 

presentations/01/se.tex

@@ -46,7 +46,7 @@ \subsection{Semi-infinity}
     Describes interaction of a system to a semi-infinite region
 
     \item%
-    Self-energy calculations \emph{require} no more than nearest neighbour interactions between unit-cells!
+    Self-energy calculations \emph{require} no more than nearest neighbour interactions between unit-cells
 
     \begin{align*}
       \SE_{\mrc 11}(E) &= \VV^\dagger\big[E+\im\eta-\HH\big]^{-1}\VV

presentations/02/sisl.tex

@@ -101,7 +101,7 @@ \subsection{Calculating DOS}
 
 \begin{verbatim}
     H = sisl.Hamiltonian.read('RUN.fdf')
-    mp = sisl.MonkhorstPack(H, [nx, ny, nz]).asaverage()
+    mp = sisl.MonkhorstPack(H, [nx, ny, nz]).apply.average
     E = np.linspace(-4, 4, 1000)
     DOS = mp.DOS(E)
 \end{verbatim}

presentations/04/hartree.tex

@@ -73,7 +73,7 @@ \subsection{Boundary conditions}
 
   \begin{block}<+->{Boundary conditions}
 
-    The electrode Hartree potential are the boundary conditions.
+    The electrode Hartree potential is the boundary condition.
 
     In TranSiesta this is accomplished by fixing the electrostatic potential at one of the
     electrode planes.