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add AMICO noddi fitting step#20

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ebrahimebrahim wants to merge 1 commit intomainfrom
14-improve-noddi-step-in-the-pipeline
Open

add AMICO noddi fitting step#20
ebrahimebrahim wants to merge 1 commit intomainfrom
14-improve-noddi-step-in-the-pipeline

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Close #14

@ebrahimebrahim ebrahimebrahim linked an issue Apr 2, 2024 that may be closed by this pull request
Comment thread fit_noddi_amico.py
mask_path = masks_path/(basename + '_mask.nii.gz')

ae = amico.Evaluation()
ae.load_data(nii_path, scheme_path, mask_path, replace_bad_voxels=0)
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still not sure about replace_bad_voxels=0

i need to look at minimally processed ABCD images and why there are "bad voxels" in the first place

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Improve NODDI step in the pipeline

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