Merge pull request #149 from icgc-argo-workflows/payload-gen-rna-alignment@0.1.2

[release]

Author: lindaxiang

payload-gen-rna-alignment/main.nf

@@ -24,7 +24,7 @@
 /* this block is auto-generated based on info from pkg.json where   */
 /* changes can be made if needed, do NOT modify this block manually */
 nextflow.enable.dsl = 2
-version = '0.1.1'
+version = '0.1.2'
 
 container = [
     'ghcr.io': 'ghcr.io/icgc-argo-workflows/data-processing-utility-tools.payload-gen-rna-alignment'

payload-gen-rna-alignment/main.py

@@ -96,7 +96,7 @@ def insert_filename_friendly_rg_id(metadata):
 
 def get_rg_id_from_ubam_qc(tar, metadata):
     tar_basename = os.path.basename(tar)  # TEST-PR.DO250122.SA610149.D0RE2_1_.6cae87bf9f05cdfaa4a26f2da625f3b2.lane.bam.fastqc.tgz
-    md5sum_from_filename = tar_basename.split('.')[4]
+    md5sum_from_filename = tar_basename.split('.')[-5]
     if not re.match(r'^[a-f0-9]{32}$', md5sum_from_filename):
         sys.exit('Error: ubam naming not expected %s' % tar_basename)
 

payload-gen-rna-alignment/pkg.json

@@ -1,6 +1,6 @@
 {
     "name": "payload-gen-rna-alignment",
-    "version": "0.1.1",
+    "version": "0.1.2",
     "description": "payload-gen-rna-alignment",
     "main": "main.nf",
     "deprecated": false,

payload-gen-rna-alignment/tests/checker.nf

@@ -29,7 +29,7 @@
 /* this block is auto-generated based on info from pkg.json where   */
 /* changes can be made if needed, do NOT modify this block manually */
 nextflow.enable.dsl = 2
-version = '0.1.1'
+version = '0.1.2'
 
 container = [
     'ghcr.io': 'ghcr.io/icgc-argo-workflows/data-processing-utility-tools.payload-gen-rna-alignment'