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Pull requests: nf-core/modules
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bio2zarr umbrella of modules, deprecating old format ones
size/l
#11207
opened Apr 16, 2026 by
vagkaratzas
Contributor
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17 tasks
Add module: vcf2circos
Ready for Review
#11206
opened Apr 16, 2026 by
tetedange13
Contributor
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11 of 13 tasks
Bwa input tuple update ch fasta fai
#11199
opened Apr 15, 2026 by
Kevin-Brockers
Contributor
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2 tasks done
fix: update ribodetector GPU container to modern PyTorch/CUDA
size/s
#11197
opened Apr 15, 2026 by
pinin4fjords
Member
•
Draft
feat: parsnp module
new module
Adding a new module
#11196
opened Apr 15, 2026 by
emmcauley
Contributor
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7 of 17 tasks
Update dependency prettier to v3.8.2
size/xs
#11175
opened Apr 14, 2026 by
renovate
bot
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2 tasks
Update KAIJU_MKFMI to also emit another taxonomy file required downstream
#11172
opened Apr 14, 2026 by
jfy133
Member
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17 tasks
seqkit: switch to sample2 subcommand
size/xs
#11145
opened Apr 10, 2026 by
bounlu
Contributor
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17 tasks
Fix tximport gene-level crash with mismatched transcript FASTA/GTF
size/m
size/s
#11141
opened Apr 9, 2026 by
pinin4fjords
Member
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3 tasks done
Whatshap/phase: add pedigree input
#11128
opened Apr 7, 2026 by
tetedange13
Contributor
•
Draft
8 of 9 tasks
Make lineages_topology output optional in FREYJA_UPDATE
#11124
opened Apr 6, 2026 by
sam-baird
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12 of 17 tasks
Add circlator/all module
#11116
opened Apr 2, 2026 by
cwoodside1278
Contributor
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11 of 14 tasks
add methurator gtestimator and plot modules
#11110
opened Apr 1, 2026 by
edogiuili
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9 of 17 tasks
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