Repositories list

• OpenToMe

  Public
  [Developing] Toolbox and Benchmark for Token Merging Modules

  Python

  •

  Apache License 2.0

  •33 forks•88 stars•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• AI-Bio

  Public
  CAIRI github io

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• Project_Achievements

  Public
  国家自然科学基金项目"几何深度学习方法研究及蛋白组学癌症模式分析应用"成果介绍

  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 24, 2026Feb 24, 2026

• SemiReward

  Public
  [ICLR 2024] SemiReward: A General Reward Model for Semi-supervised Learning

  machine-learningnatural-language-processingcomputer-vision+ 11

  machine-learningnatural-language-processingcomputer-visionregressiontransformersemi-supervised-learningaudio-classificationweakly-supervised-learningyahoo-answerscifar-100+ 4

  Python

  •

  Apache License 2.0

  •33 forks•7777 stars•00 issues•00 pull requests•Updated Nov 9, 2025Nov 9, 2025

• openmixup

  Public
  CAIRI Supervised, Semi- and Self-Supervised Visual Representation Learning Toolbox and Benchmark

  benchmarkmachine-learningdeep-learning+ 15

  benchmarkmachine-learningdeep-learningpytorchdata-generationsemi-supervised-learningimagenetawesome-listdata-augmentationmixup+ 8

  Python

  •

  Apache License 2.0

  •6262 forks•656656 stars•66 issues•11 pull request•Updated Oct 15, 2025Oct 15, 2025

• MogaNet

  Public
  [ICLR 2024] MogaNet: Efficient Multi-order Gated Aggregation Network

  machine-learningbackboneconvnet+ 14

  machine-learningbackboneconvnetcnnpytorchimagenetimage-classificationcocosegmentationobject-detection+ 7

  Jupyter Notebook

  •

  Apache License 2.0

  •2121 forks•271271 stars•88 issues•00 pull requests•Updated Jun 28, 2025Jun 28, 2025

• DMT-learn

  Public
  An Explainable Deep Network for Dimension Reduction

  pythondata-sciencedimension-reduction

  pythondata-sciencedimension-reduction

  Python

  •

  MIT License

  •00 forks•88 stars•00 issues•00 pull requests•Updated Nov 18, 2024Nov 18, 2024

• DiscoGNNs

  Public
  [ICDE 2024]Official implementation of ICDE 2024 paper "DiscoGNN: A Sample-Efficient Framework for Self-Supervised Graph Representation Learning"

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 22, 2024Oct 22, 2024

• OT-Cleaner

  Public
  [ICASSP 2022]OT-Cleaner: Label Correction as Optimal Transport

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 22, 2024Oct 22, 2024

• Awesome-Mixup

  Public
  [Survey] Awesome List of Mixup Augmentation and Beyond (https://arxiv.org/abs/2409.05202)

  natural-language-processingcomputer-visiondeep-learning+ 7

  natural-language-processingcomputer-visiondeep-learninggraphimage-classificationawesome-listdata-augmentationmixupself-supervised-learningawesome-mixup

  Apache License 2.0

  •1111 forks•168168 stars•00 issues•00 pull requests•Updated Oct 14, 2024Oct 14, 2024

• CBGBench

  Public
  Official code repository of CBGBench: Fill in the Blank of Protein-Molecule Complex Binding Graph

  Python

  •

  GNU General Public License v3.0

  •3939 forks•00 stars•00 issues•00 pull requests•Updated Oct 10, 2024Oct 10, 2024

• FoldToken_open

  Public
  Python

  •44 forks•00 stars•00 issues•00 pull requests•Updated Oct 9, 2024Oct 9, 2024

• FoldMaskGPT

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 9, 2024Oct 9, 2024

• FoldGPT_open

  Public
  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Oct 9, 2024Oct 9, 2024

• Prompt-DDG

  Public
  Code for ICML 2024 paper "Learning to Predict Mutational Effects of Protein-Protein Interactions by Microenvironment-aware Hierarchical Prompt Learning"

  Python

  •

  MIT License

  •55 forks•00 stars•00 issues•00 pull requests•Updated Oct 8, 2024Oct 8, 2024

• ppflow

  Public
  This repository is the official code source of PPFlow: Target-Aware Peptide Design with Torsional Flow Matching (ICML2024)

  Python

  •1212 forks•00 stars•00 issues•00 pull requests•Updated Sep 25, 2024Sep 25, 2024

• VQDNA

  Public
  [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling

  Apache License 2.0

  •22 forks•11 star•00 issues•00 pull requests•Updated Sep 22, 2024Sep 22, 2024

• ProteinInvBench

  Public
  The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics

  Python

  •1111 forks•00 stars•00 issues•00 pull requests•Updated Sep 18, 2024Sep 18, 2024

• PoincareDMT

  Public
  Python

  •11 fork•22 stars•00 issues•00 pull requests•Updated Sep 5, 2024Sep 5, 2024

• OpenSTL

  Public
  OpenSTL: A Comprehensive Benchmark of Spatio-Temporal Predictive Learning

  Python

  •

  Apache License 2.0

  •186186 forks•00 stars•00 issues•00 pull requests•Updated Sep 4, 2024Sep 4, 2024

• R3Design

  Public
  C++

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 23, 2024Aug 23, 2024

• A2MIM

  Public
  [ICML 2023] Architecture-Agnostic Masked Image Modeling -- From ViT back to CNN

  pytorchimagenetconvolutional-neural-networks+ 10

  pytorchimagenetconvolutional-neural-networksobject-detectiontransfer-learningautoregressivesemantic-segmentationmaeself-supervised-learningmasked-autoencoder+ 3

  Python

  •

  Apache License 2.0

  •33 forks•3030 stars•11 issue•00 pull requests•Updated Aug 15, 2024Aug 15, 2024

• awesome-graph-self-supervised-learning

  Public
  Code for TKDE paper "Self-supervised learning on graphs: Contrastive, generative, or predictive"

  164164 forks•00 stars•00 issues•00 pull requests•Updated Aug 15, 2024Aug 15, 2024

• Backbone-vs-Optimizer

  Public
  A Decade’s Battle on Bias of Visual Backbone and Optimizer

  Jupyter Notebook

  •

  Apache License 2.0

  •00 forks•66 stars•00 issues•00 pull requests•Updated Aug 6, 2024Aug 6, 2024

• awesome-protein-representation-learning

  Public
  Awesome Protein Representation Learning

  MIT License

  •7373 forks•00 stars•00 issues•00 pull requests•Updated Jul 30, 2024Jul 30, 2024

• TGS

  Public
  Code for TKDE paper "A Teacher-Free Graph Knowledge Distillation Framework with Dual Self-Distillation"

  Python

  •

  MIT License

  •44 forks•11 star•00 issues•00 pull requests•Updated Jul 20, 2024Jul 20, 2024

• FF-G2M

  Public
  Code for AAAI 2023 (Oral) paper "Extracting Low-/High- Frequency Knowledge from Graph Neural Networks and Injecting it into MLPs: An Effective GNN-to-MLP Distil…

  Python

  •

  MIT License

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jul 20, 2024Jul 20, 2024

• HGMD

  Public
  Code fo CIKM2024 paper "Teach Harder, Learn Poorer: Rethinking Hard Sample Distillation for GNN-to-MLP Knowledge Distillation"

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 20, 2024Jul 20, 2024

• RFold

  Public
  The official implementation of the ICML'24 paper RFold: Deciphering RNA Secondary Structure Prediction: A Probabilistic K-Rook Matching Perspective..

  Python

  •66 forks•00 stars•00 issues•00 pull requests•Updated Jul 20, 2024Jul 20, 2024

• diffbp

  Public
  This is the official repository of thr paper DiffBP: Generative Diffusion of 3D Molecules for Target Protein Binding.

  11 fork•00 stars•00 issues•00 pull requests•Updated Jun 25, 2024Jun 25, 2024