Local version of the virus identification and analysis web server (tool set)

TrIdent- Transduction Identification: Automatic detection, classification and characterization of active transduction events in microbiomes.

LLM-powered classification of phage protein functions to identify strong lytic candidates against Klebsiella, using transfer learning and biological embeddings.

SaPhARI: An Adaptable Bioinformatics Tool for the Discovery of Novel Phage Satellites

Cocktail is a program for mathematical modelling of bacteriophage (phage) infection kinetics. Cocktail is a Windows 64-bit program and the source code can be developed in the directions that users see fit. This will be updated soon with a link to the scientific publication describing the program.

Detect elevations and gaps in read coverage on metagenome contigs or assembled genomes

Computational analysis of bacteriophage genomes including genome feature extraction, metadata integration, QC filtering, and large-scale statistical analysis.

📑Reports and bioinformatics analyses from internship in Indonesia

Prediction of bacterial host for phage

Creation of a local database for bacteriophages

Langevin dynamics simulation of bacteriophage-bacteria interaction

Python code for implementing antiviral mass-balance in pre-harvest herbal plants.

Predicting bacteria-phage interactions given phage and target bacterias sequenced genomes as well as hostrange interaction information. Special Course in Colab with DTU Healthtech

Scripts used to prepare the "Self-splicing introns in genes of Bastillevirinae bacteriophages" paper